Mercurial > repos > bgruening > text_processing
diff sort.xml @ 6:8928e6d1e7ba draft
Uploaded
author | bgruening |
---|---|
date | Thu, 08 Jan 2015 09:07:31 -0500 |
parents | 56e80527c482 |
children | d64eace4f9f3 |
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--- a/sort.xml Wed Jan 07 11:15:41 2015 -0500 +++ b/sort.xml Thu Jan 08 09:07:31 2015 -0500 @@ -10,6 +10,7 @@ <command> <![CDATA[ ( + LC_ALL=C #if int($header) > 0: sed -u '${header}'q && #end if @@ -50,14 +51,13 @@ label="Output unique values" help="Print only unique values, based on sorted key columns. See help section for details. (--unique)" /> <param name="ignore_case" type="boolean" checked="false" truevalue="-i" falsevalue="" label="Ignore case" help="Sort and Join key column values regardless of upper/lower case letters. (-i)" /> - </inputs> <outputs> - <data format="input" name="outfile" metadata_source="infile"/> + <data name="outfile" format_source="infile" metadata_source="infile"/> </outputs> <tests> <test> - <param name="infile" value="sort_in1.bed"/> + <param name="infile" value="sort1.bed"/> <param name="header" value="3"/> <repeat name="sortkeys"> <param name="column" value="1"/> @@ -72,7 +72,7 @@ <output name="outfile" file="sort_result1.bed"/> </test> <test> - <param name="infile" value="sort_in1.bed"/> + <param name="infile" value="sort1.bed"/> <param name="header" value="3"/> <repeat name="sortkeys"> <param name="column" value="1"/> @@ -87,7 +87,7 @@ <output name="outfile" file="sort_result2.bed"/> </test> <test> - <param name="infile" value="sort_in2.bed"/> + <param name="infile" value="sort2.bed"/> <repeat name="sortkeys"> <param name="column" value="5"/> <param name="style" value="g"/>