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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="1.12.0">
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3 <description>Applies thresholdfilter to peak spectra.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">SpectraFilterNormalizer</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>SpectraFilterNormalizer
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 -threads \${GALAXY_SLOTS:-24}
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15 -algorithm:method ${param_method}
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16 </command>
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17 <inputs>
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18 <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
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19 <param name="param_method" type="select" optional="True" value="to_one" label="Normalize by deviding though the TIC ('to_TIC') or normalize to max intensity of one ('to_one')." help="(-method)">
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20 <option value="to_one">to_one</option>
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21 <option value="to_TIC">to_TIC</option>
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22 </param>
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23 </inputs>
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24 <outputs>
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25 <data name="param_out" label="output file " format="mzML"/>
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26 </outputs>
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27 <help>**What it does**
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28
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29 Applies thresholdfilter to peak spectra.
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30
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31
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32 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html
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33
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34 @REFERENCES@
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35 </help>
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36 </tool>
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