Mercurial > repos > bgruening > openms
diff SpectraFilterNormalizer.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SpectraFilterNormalizer.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,36 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="1.12.0"> + <description>Applies thresholdfilter to peak spectra.</description> + <macros> + <token name="@EXECUTABLE@">SpectraFilterNormalizer</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>SpectraFilterNormalizer + +-in ${param_in} +-out ${param_out} +-threads \${GALAXY_SLOTS:-24} +-algorithm:method ${param_method} +</command> + <inputs> + <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/> + <param name="param_method" type="select" optional="True" value="to_one" label="Normalize by deviding though the TIC ('to_TIC') or normalize to max intensity of one ('to_one')." help="(-method)"> + <option value="to_one">to_one</option> + <option value="to_TIC">to_TIC</option> + </param> + </inputs> + <outputs> + <data name="param_out" label="output file " format="mzML"/> + </outputs> + <help>**What it does** + +Applies thresholdfilter to peak spectra. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html + +@REFERENCES@ +</help> +</tool>
