diff SpectraFilterNormalizer.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SpectraFilterNormalizer.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="1.12.0">
+  <description>Applies thresholdfilter to peak spectra.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SpectraFilterNormalizer</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SpectraFilterNormalizer
+
+-in ${param_in}
+-out ${param_out}
+-threads \${GALAXY_SLOTS:-24} 
+-algorithm:method ${param_method}
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
+    <param name="param_method" type="select" optional="True" value="to_one" label="Normalize by deviding though the TIC ('to_TIC') or normalize to max intensity of one ('to_one')." help="(-method)">
+      <option value="to_one">to_one</option>
+      <option value="to_TIC">to_TIC</option>
+    </param>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output file " format="mzML"/>
+  </outputs>
+  <help>**What it does**
+
+Applies thresholdfilter to peak spectra.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html
+
+@REFERENCES@
+</help>
+</tool>