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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="SpectraFilterWindowMower" name="SpectraFilterWindowMower" version="1.12.0">
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3 <description>Applies thresholdfilter to peak spectra.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">SpectraFilterWindowMower</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>SpectraFilterWindowMower
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 -threads \${GALAXY_SLOTS:-24}
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15 -algorithm:windowsize ${param_windowsize}
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16 -algorithm:peakcount ${param_peakcount}
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17 -algorithm:movetype ${param_movetype}
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18 </command>
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19 <inputs>
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20 <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
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21 <param name="param_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis." help="(-windowsize)"/>
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22 <param name="param_peakcount" type="integer" value="2" label="The number of peaks that should be kept." help="(-peakcount)"/>
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23 <param name="param_movetype" type="select" optional="True" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used." help="(-movetype)">
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24 <option value="slide">slide</option>
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25 <option value="jump">jump</option>
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26 </param>
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27 </inputs>
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28 <outputs>
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29 <data name="param_out" label="output file " format="mzML"/>
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30 </outputs>
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31 <help>**What it does**
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32
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33 Applies thresholdfilter to peak spectra.
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34
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35
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36 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterWindowMower.html
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37
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38 @REFERENCES@
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39 </help>
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40 </tool>
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