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comparison SpectraFilterWindowMower.xml @ 0:3d84209d3178 draft

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author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
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1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="SpectraFilterWindowMower" name="SpectraFilterWindowMower" version="1.12.0">
3 <description>Applies thresholdfilter to peak spectra.</description>
4 <macros>
5 <token name="@EXECUTABLE@">SpectraFilterWindowMower</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>SpectraFilterWindowMower
11
12 -in ${param_in}
13 -out ${param_out}
14 -threads \${GALAXY_SLOTS:-24}
15 -algorithm:windowsize ${param_windowsize}
16 -algorithm:peakcount ${param_peakcount}
17 -algorithm:movetype ${param_movetype}
18 </command>
19 <inputs>
20 <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
21 <param name="param_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis." help="(-windowsize)"/>
22 <param name="param_peakcount" type="integer" value="2" label="The number of peaks that should be kept." help="(-peakcount)"/>
23 <param name="param_movetype" type="select" optional="True" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used." help="(-movetype)">
24 <option value="slide">slide</option>
25 <option value="jump">jump</option>
26 </param>
27 </inputs>
28 <outputs>
29 <data name="param_out" label="output file " format="mzML"/>
30 </outputs>
31 <help>**What it does**
32
33 Applies thresholdfilter to peak spectra.
34
35
36 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterWindowMower.html
37
38 @REFERENCES@
39 </help>
40 </tool>