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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="1.12.0">
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3 <description>Applies thresholdfilter to peak spectra.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">SpectraFilterBernNorm</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>SpectraFilterBernNorm
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 -threads \${GALAXY_SLOTS:-24}
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15 -algorithm:threshold ${param_threshold}
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16 #if $adv_opts.adv_opts_selector=='advanced':
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17 -algorithm:C1 ${adv_opts.param_C1}
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18 -algorithm:C2 ${adv_opts.param_C2}
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19 #end if
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20 </command>
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21 <inputs>
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22 <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
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23 <param name="param_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization." help="(-threshold)"/>
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24 <expand macro="advanced_options">
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25 <param name="param_C1" type="float" value="28.0" label="C1 value of the normalization." help="(-C1)"/>
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26 <param name="param_C2" type="float" value="400.0" label="C2 value of the normalization." help="(-C2)"/>
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27 </expand>
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28 </inputs>
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29 <outputs>
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30 <data name="param_out" label="output file " format="mzML"/>
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31 </outputs>
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32 <help>**What it does**
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33
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34 Applies thresholdfilter to peak spectra.
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35
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36
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37 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterBernNorm.html
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38
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39 @REFERENCES@
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40 </help>
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41 </tool>
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