--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SpectraFilterBernNorm.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,41 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="1.12.0">
+  <description>Applies thresholdfilter to peak spectra.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SpectraFilterBernNorm</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SpectraFilterBernNorm
+
+-in ${param_in}
+-out ${param_out}
+-threads \${GALAXY_SLOTS:-24} 
+-algorithm:threshold ${param_threshold}
+#if $adv_opts.adv_opts_selector=='advanced':
+    -algorithm:C1 ${adv_opts.param_C1}
+    -algorithm:C2 ${adv_opts.param_C2}
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
+    <param name="param_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization." help="(-threshold)"/>
+    <expand macro="advanced_options">
+      <param name="param_C1" type="float" value="28.0" label="C1 value of the normalization." help="(-C1)"/>
+      <param name="param_C2" type="float" value="400.0" label="C2 value of the normalization." help="(-C2)"/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="output file " format="mzML"/>
+  </outputs>
+  <help>**What it does**
+
+Applies thresholdfilter to peak spectra.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterBernNorm.html
+
+@REFERENCES@
+</help>
+</tool>