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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="IDSplitter" name="IDSplitter" version="1.12.0">
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3 <description>Splits protein/peptide identifications off of annotated data files</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">IDSplitter</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>IDSplitter
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 -id_out ${param_id_out}
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15 -threads \${GALAXY_SLOTS:-24}
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16 </command>
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17 <inputs>
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18 <param name="param_in" type="data" format="mzML,featureXML,consensusXML" optional="False" label="Input file (data annotated with identifications)" help="(-in)"/>
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19 </inputs>
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20 <outputs>
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21 <data name="param_out" label="Output file (data without identifications). Either 'out' or 'id_out' are required. They can be used together." format="consensusXML">
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22 <change_format>
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23 <when input="param_out_type" value="mzML" format="mzML"/>
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24 <when input="param_out_type" value="featureXML" format="featureXML"/>
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25 </change_format>
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26 </data>
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27 <data name="param_id_out" label="Output file (identifications). Either 'out' or 'id_out' are required. They can be used together." format="idXML"/>
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28 </outputs>
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29 <help>**What it does**
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30
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31 Splits protein/peptide identifications off of annotated data files
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32
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33
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34 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDSplitter.html
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35
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36 @REFERENCES@
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37 </help>
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38 </tool>
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