diff IDSplitter.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IDSplitter.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="IDSplitter" name="IDSplitter" version="1.12.0">
+  <description>Splits protein/peptide identifications off of annotated data files</description>
+  <macros>
+    <token name="@EXECUTABLE@">IDSplitter</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>IDSplitter
+
+-in ${param_in}
+-out ${param_out}
+-id_out ${param_id_out}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzML,featureXML,consensusXML" optional="False" label="Input file (data annotated with identifications)" help="(-in)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Output file (data without identifications). Either 'out' or 'id_out' are required. They can be used together." format="consensusXML">
+      <change_format>
+        <when input="param_out_type" value="mzML" format="mzML"/>
+        <when input="param_out_type" value="featureXML" format="featureXML"/>
+      </change_format>
+    </data>
+    <data name="param_id_out" label="Output file (identifications). Either 'out' or 'id_out' are required. They can be used together." format="idXML"/>
+  </outputs>
+  <help>**What it does**
+
+Splits protein/peptide identifications off of annotated data files
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDSplitter.html
+
+@REFERENCES@
+</help>
+</tool>