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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="DeMeanderize" name="DeMeanderize" version="1.12.0">
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3 <description>Orders the spectra of MALDI spotting plates correctly.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">DeMeanderize</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>DeMeanderize
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 -num_spots_per_row ${param_num_spots_per_row}
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15 -threads \${GALAXY_SLOTS:-24}
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16 #if $adv_opts.adv_opts_selector=='advanced':
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17 -RT_distance ${adv_opts.param_RT_distance}
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18 #end if
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19 </command>
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20 <inputs>
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21 <param name="param_in" type="data" format="mzML" optional="False" label="Input experiment file, containing the wrongly sorted spectra." help="(-in)"/>
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22 <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted." help="(-num_spots_per_row)"/>
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23 <expand macro="advanced_options">
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24 <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT." help="(-RT_distance)"/>
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25 </expand>
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26 </inputs>
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27 <outputs>
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28 <data name="param_out" label="Output experiment file with correctly sorted spectra." format="mzML"/>
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29 </outputs>
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30 <help>**What it does**
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31
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32 Orders the spectra of MALDI spotting plates correctly.
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33
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34
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35 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html
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36
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37 @REFERENCES@
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38 </help>
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39 </tool>
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