--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DeMeanderize.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,39 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="DeMeanderize" name="DeMeanderize" version="1.12.0">
+  <description>Orders the spectra of MALDI spotting plates correctly.</description>
+  <macros>
+    <token name="@EXECUTABLE@">DeMeanderize</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>DeMeanderize
+
+-in ${param_in}
+-out ${param_out}
+-num_spots_per_row ${param_num_spots_per_row}
+-threads \${GALAXY_SLOTS:-24} 
+#if $adv_opts.adv_opts_selector=='advanced':
+    -RT_distance ${adv_opts.param_RT_distance}
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzML" optional="False" label="Input experiment file, containing the wrongly sorted spectra." help="(-in)"/>
+    <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted." help="(-num_spots_per_row)"/>
+    <expand macro="advanced_options">
+      <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT." help="(-RT_distance)"/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="Output experiment file with correctly sorted spectra." format="mzML"/>
+  </outputs>
+  <help>**What it does**
+
+Orders the spectra of MALDI spotting plates correctly.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html
+
+@REFERENCES@
+</help>
+</tool>