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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="CVInspector" name="CVInspector" version="1.12.0">
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3 <description>A tool for visualization and validation of PSI mapping and CV files.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">CVInspector</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>CVInspector
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11
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12 -cv_files ${param_cv_files}
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13 -cv_names ${param_cv_names}
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14 -mapping_file ${param_mapping_file}
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15 -ignore_cv ${param_ignore_cv}
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16 -html ${param_html}
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17 -threads \${GALAXY_SLOTS:-24}
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18 </command>
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19 <inputs>
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20 <param name="param_cv_files" type="data" format="" optional="False" size="20" label="List of ontology files in OBO format." help="(-cv_files)"/>
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21 <param name="param_cv_names" type="text" size="20" label="List of identifiers (one for each ontology file)." help="(-cv_names)"/>
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22 <param name="param_mapping_file" type="data" format="xml" optional="True" label="Mapping file in CVMapping (XML) format." help="(-mapping_file)"/>
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23 <param name="param_ignore_cv" type="text" size="20" value="UO PATO BTO" label="A list of CV identifiers which should be ignored." help="(-ignore_cv)"/>
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24 </inputs>
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25 <outputs>
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26 <data name="param_html" label="Writes an HTML version of the mapping file with annotated CV terms" format="html"/>
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27 </outputs>
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28 <help>**What it does**
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29
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30 A tool for visualization and validation of PSI mapping and CV files.
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31
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32
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33 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_CVInspector.html
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34
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35 @REFERENCES@
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36 </help>
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37 </tool>
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