diff CVInspector.xml @ 0:3d84209d3178 draft

Uploaded
author bgruening
date Fri, 10 Oct 2014 18:20:03 -0400
parents
children 6ead64a594bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/CVInspector.xml	Fri Oct 10 18:20:03 2014 -0400
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+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="CVInspector" name="CVInspector" version="1.12.0">
+  <description>A tool for visualization and validation of PSI mapping and CV files.</description>
+  <macros>
+    <token name="@EXECUTABLE@">CVInspector</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>CVInspector
+
+-cv_files ${param_cv_files}
+-cv_names ${param_cv_names}
+-mapping_file ${param_mapping_file}
+-ignore_cv ${param_ignore_cv}
+-html ${param_html}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_cv_files" type="data" format="" optional="False" size="20" label="List of ontology files in OBO format." help="(-cv_files)"/>
+    <param name="param_cv_names" type="text" size="20" label="List of identifiers (one for each ontology file)." help="(-cv_names)"/>
+    <param name="param_mapping_file" type="data" format="xml" optional="True" label="Mapping file in CVMapping (XML) format." help="(-mapping_file)"/>
+    <param name="param_ignore_cv" type="text" size="20" value="UO PATO BTO" label="A list of CV identifiers which should be ignored." help="(-ignore_cv)"/>
+  </inputs>
+  <outputs>
+    <data name="param_html" label="Writes an HTML version of the mapping file with annotated CV terms" format="html"/>
+  </outputs>
+  <help>**What it does**
+
+A tool for visualization and validation of PSI mapping and CV files.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_CVInspector.html
+
+@REFERENCES@
+</help>
+</tool>