Mercurial > repos > bgruening > openms
diff CVInspector.xml @ 0:3d84209d3178 draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 10 Oct 2014 18:20:03 -0400 |
| parents | |
| children | 6ead64a594bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CVInspector.xml Fri Oct 10 18:20:03 2014 -0400 @@ -0,0 +1,37 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="CVInspector" name="CVInspector" version="1.12.0"> + <description>A tool for visualization and validation of PSI mapping and CV files.</description> + <macros> + <token name="@EXECUTABLE@">CVInspector</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>CVInspector + +-cv_files ${param_cv_files} +-cv_names ${param_cv_names} +-mapping_file ${param_mapping_file} +-ignore_cv ${param_ignore_cv} +-html ${param_html} +-threads \${GALAXY_SLOTS:-24} +</command> + <inputs> + <param name="param_cv_files" type="data" format="" optional="False" size="20" label="List of ontology files in OBO format." help="(-cv_files)"/> + <param name="param_cv_names" type="text" size="20" label="List of identifiers (one for each ontology file)." help="(-cv_names)"/> + <param name="param_mapping_file" type="data" format="xml" optional="True" label="Mapping file in CVMapping (XML) format." help="(-mapping_file)"/> + <param name="param_ignore_cv" type="text" size="20" value="UO PATO BTO" label="A list of CV identifiers which should be ignored." help="(-ignore_cv)"/> + </inputs> + <outputs> + <data name="param_html" label="Writes an HTML version of the mapping file with annotated CV terms" format="html"/> + </outputs> + <help>**What it does** + +A tool for visualization and validation of PSI mapping and CV files. + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_CVInspector.html + +@REFERENCES@ +</help> +</tool>
