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annotate venv/lib/python2.7/site-packages/planemo/linters/xsd.py @ 0:d67268158946 draft

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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author bcclaywell
date Mon, 12 Oct 2015 17:43:33 -0400
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d67268158946 planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
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1 """ Tool linting module that lints Galaxy tool against experimental XSD.
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2 """
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3 import copy
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4 import os
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5 import tempfile
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6
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7 from planemo.xml import XSDS_PATH
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8 import planemo.lint
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9
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10 TOOL_XSD = os.path.join(XSDS_PATH, "tool", "galaxy.xsd")
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13 def lint_tool_xsd(root, lint_ctx):
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14 """ Write a temp file out and lint it.
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15 """
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16 with tempfile.NamedTemporaryFile() as tf:
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17 _clean_root(root).write(tf.name)
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18 planemo.lint.lint_xsd(lint_ctx, TOOL_XSD, tf.name)
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20
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21 def _clean_root(root):
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22 """ XSD assumes macros have been expanded, so remove them.
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23 """
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24 clean_root = copy.deepcopy(root)
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25 to_remove = []
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26 for macros_el in clean_root.findall("macros"):
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27 to_remove.append(macros_el)
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28 for macros_el in to_remove:
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29 clean_root.getroot().remove(macros_el)
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30 return clean_root