Mercurial > repos > bcclaywell > argo_navis
comparison venv/lib/python2.7/site-packages/planemo/linters/xsd.py @ 0:d67268158946 draft
planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
| author | bcclaywell |
|---|---|
| date | Mon, 12 Oct 2015 17:43:33 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:d67268158946 |
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| 1 """ Tool linting module that lints Galaxy tool against experimental XSD. | |
| 2 """ | |
| 3 import copy | |
| 4 import os | |
| 5 import tempfile | |
| 6 | |
| 7 from planemo.xml import XSDS_PATH | |
| 8 import planemo.lint | |
| 9 | |
| 10 TOOL_XSD = os.path.join(XSDS_PATH, "tool", "galaxy.xsd") | |
| 11 | |
| 12 | |
| 13 def lint_tool_xsd(root, lint_ctx): | |
| 14 """ Write a temp file out and lint it. | |
| 15 """ | |
| 16 with tempfile.NamedTemporaryFile() as tf: | |
| 17 _clean_root(root).write(tf.name) | |
| 18 planemo.lint.lint_xsd(lint_ctx, TOOL_XSD, tf.name) | |
| 19 | |
| 20 | |
| 21 def _clean_root(root): | |
| 22 """ XSD assumes macros have been expanded, so remove them. | |
| 23 """ | |
| 24 clean_root = copy.deepcopy(root) | |
| 25 to_remove = [] | |
| 26 for macros_el in clean_root.findall("macros"): | |
| 27 to_remove.append(macros_el) | |
| 28 for macros_el in to_remove: | |
| 29 clean_root.getroot().remove(macros_el) | |
| 30 return clean_root |