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1 #ifndef SEQUENCEUTILS_H
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2 #define SEQUENCEUTILS_H
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3
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4 #include <string>
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5 #include <algorithm>
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6 #include <cctype>
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7
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8 using namespace std;
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9
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10 // Performs an in-place sequence reversal
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11 void reverseSequence(string &seq);
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12
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13 // Performs an in-place reverse complement conversion
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14 void reverseComplement(string &seq);
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15
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16 // Converts every character in a string to lowercase
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17 void toLowerCase(string &seq);
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18
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19 // Converts every character in a string to uppercase
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20 void toUpperCase(string &seq);
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21
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22 // Calculates the number of a, c, g, t, n, and other bases found in a sequence
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23 void getDnaContent(const string &seq, int &a, int &c, int &g, int &t, int &n, int &other);
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24
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25 int countPattern(const string &seq, const string &pattern);
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26
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27 #endif
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