--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/utils/sequenceUtilities/sequenceUtils.h	Thu Nov 03 10:25:04 2011 -0400
@@ -0,0 +1,27 @@
+#ifndef SEQUENCEUTILS_H
+#define SEQUENCEUTILS_H
+
+#include <string>
+#include <algorithm>
+#include <cctype>
+
+using namespace std;
+
+// Performs an in-place sequence reversal
+void reverseSequence(string &seq);
+
+// Performs an in-place reverse complement conversion
+void reverseComplement(string &seq);
+
+// Converts every character in a string to lowercase
+void toLowerCase(string &seq);
+
+// Converts every character in a string to uppercase
+void toUpperCase(string &seq);
+
+// Calculates the number of a, c, g, t, n, and other bases found in a sequence
+void getDnaContent(const string &seq, int &a, int &c, int &g, int &t, int &n, int &other);
+
+int countPattern(const string &seq, const string &pattern);
+
+#endif