annotate BEDTools-Version-2.14.3/src/utils/gzstream/gzstream.h @ 0:dfcd8b6c1bda

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author aaronquinlan
date Thu, 03 Nov 2011 10:25:04 -0400
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1 // ============================================================================
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2 // gzstream, C++ iostream classes wrapping the zlib compression library.
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3 // Copyright (C) 2001 Deepak Bandyopadhyay, Lutz Kettner
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4 //
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5 // This library is free software; you can redistribute it and/or
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6 // modify it under the terms of the GNU Lesser General Public
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7 // License as published by the Free Software Foundation; either
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8 // version 2.1 of the License, or (at your option) any later version.
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9 //
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10 // This library is distributed in the hope that it will be useful,
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11 // but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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13 // Lesser General Public License for more details.
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14 //
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15 // You should have received a copy of the GNU Lesser General Public
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16 // License along with this library; if not, write to the Free Software
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17 // Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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18 // ============================================================================
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19 //
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20 // File : gzstream.h
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21 // Revision : $Revision: 1.5 $
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22 // Revision_date : $Date: 2002/04/26 23:30:15 $
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23 // Author(s) : Deepak Bandyopadhyay, Lutz Kettner
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24 //
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25 // Standard streambuf implementation following Nicolai Josuttis, "The
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26 // Standard C++ Library".
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27 // ============================================================================
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28
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29 #ifndef GZSTREAM_H
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30 #define GZSTREAM_H 1
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31
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32 // standard C++ with new header file names and std:: namespace
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33 #include <iostream>
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34 #include <fstream>
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35 #include <zlib.h>
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36
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37 #ifdef GZSTREAM_NAMESPACE
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38 namespace GZSTREAM_NAMESPACE {
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39 #endif
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40
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41 // ----------------------------------------------------------------------------
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42 // Internal classes to implement gzstream. See below for user classes.
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43 // ----------------------------------------------------------------------------
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44
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45 class gzstreambuf : public std::streambuf {
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46 private:
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47 static const int bufferSize = 47+256; // size of data buff
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48 // totals 512 bytes under g++ for igzstream at the end.
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49
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50 gzFile file; // file handle for compressed file
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51 char buffer[bufferSize]; // data buffer
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52 char opened; // open/close state of stream
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53 int mode; // I/O mode
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54
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55 int flush_buffer();
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56 public:
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57 gzstreambuf() : opened(0) {
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58 setp( buffer, buffer + (bufferSize-1));
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59 setg( buffer + 4, // beginning of putback area
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60 buffer + 4, // read position
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61 buffer + 4); // end position
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62 // ASSERT: both input & output capabilities will not be used together
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63 }
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64 int is_open() { return opened; }
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65 gzstreambuf* open( const char* name, int open_mode);
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66 gzstreambuf* close();
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67 ~gzstreambuf() { close(); }
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68
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69 virtual int overflow( int c = EOF);
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70 virtual int underflow();
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71 virtual int sync();
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72 };
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73
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74 class gzstreambase : virtual public std::ios {
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75 protected:
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76 gzstreambuf buf;
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77 public:
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78 gzstreambase() { init(&buf); }
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79 gzstreambase( const char* name, int open_mode);
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80 ~gzstreambase();
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81 void open( const char* name, int open_mode);
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82 void close();
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83 gzstreambuf* rdbuf() { return &buf; }
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84 };
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85
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86 // ----------------------------------------------------------------------------
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87 // User classes. Use igzstream and ogzstream analogously to ifstream and
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88 // ofstream respectively. They read and write files based on the gz*
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89 // function interface of the zlib. Files are compatible with gzip compression.
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90 // ----------------------------------------------------------------------------
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91
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92 class igzstream : public gzstreambase, public std::istream {
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93 public:
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94 igzstream() : std::istream( &buf) {}
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95 igzstream( const char* name, int open_mode = std::ios::in)
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96 : gzstreambase( name, open_mode), std::istream( &buf) {}
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97 gzstreambuf* rdbuf() { return gzstreambase::rdbuf(); }
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98 void open( const char* name, int open_mode = std::ios::in) {
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99 gzstreambase::open( name, open_mode);
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100 }
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101 };
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102
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103 class ogzstream : public gzstreambase, public std::ostream {
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104 public:
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105 ogzstream() : std::ostream( &buf) {}
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106 ogzstream( const char* name, int mode = std::ios::out)
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107 : gzstreambase( name, mode), std::ostream( &buf) {}
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108 gzstreambuf* rdbuf() { return gzstreambase::rdbuf(); }
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109 void open( const char* name, int open_mode = std::ios::out) {
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110 gzstreambase::open( name, open_mode);
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111 }
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112 };
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113
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114 #ifdef GZSTREAM_NAMESPACE
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115 } // namespace GZSTREAM_NAMESPACE
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116 #endif
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117
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118 #endif // GZSTREAM_H
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119 // ============================================================================
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120 // EOF //
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121