--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/BEDTools-Version-2.14.3/src/utils/gzstream/gzstream.h	Thu Nov 03 10:25:04 2011 -0400
@@ -0,0 +1,121 @@
+// ============================================================================
+// gzstream, C++ iostream classes wrapping the zlib compression library.
+// Copyright (C) 2001  Deepak Bandyopadhyay, Lutz Kettner
+//
+// This library is free software; you can redistribute it and/or
+// modify it under the terms of the GNU Lesser General Public
+// License as published by the Free Software Foundation; either
+// version 2.1 of the License, or (at your option) any later version.
+//
+// This library is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+// Lesser General Public License for more details.
+//
+// You should have received a copy of the GNU Lesser General Public
+// License along with this library; if not, write to the Free Software
+// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+// ============================================================================
+//
+// File          : gzstream.h
+// Revision      : $Revision: 1.5 $
+// Revision_date : $Date: 2002/04/26 23:30:15 $
+// Author(s)     : Deepak Bandyopadhyay, Lutz Kettner
+//
+// Standard streambuf implementation following Nicolai Josuttis, "The
+// Standard C++ Library".
+// ============================================================================
+
+#ifndef GZSTREAM_H
+#define GZSTREAM_H 1
+
+// standard C++ with new header file names and std:: namespace
+#include <iostream>
+#include <fstream>
+#include <zlib.h>
+
+#ifdef GZSTREAM_NAMESPACE
+namespace GZSTREAM_NAMESPACE {
+#endif
+
+// ----------------------------------------------------------------------------
+// Internal classes to implement gzstream. See below for user classes.
+// ----------------------------------------------------------------------------
+
+class gzstreambuf : public std::streambuf {
+private:
+    static const int bufferSize = 47+256;    // size of data buff
+    // totals 512 bytes under g++ for igzstream at the end.
+
+    gzFile           file;               // file handle for compressed file
+    char             buffer[bufferSize]; // data buffer
+    char             opened;             // open/close state of stream
+    int              mode;               // I/O mode
+
+    int flush_buffer();
+public:
+    gzstreambuf() : opened(0) {
+        setp( buffer, buffer + (bufferSize-1));
+        setg( buffer + 4,     // beginning of putback area
+              buffer + 4,     // read position
+              buffer + 4);    // end position
+        // ASSERT: both input & output capabilities will not be used together
+    }
+    int is_open() { return opened; }
+    gzstreambuf* open( const char* name, int open_mode);
+    gzstreambuf* close();
+    ~gzstreambuf() { close(); }
+
+    virtual int     overflow( int c = EOF);
+    virtual int     underflow();
+    virtual int     sync();
+};
+
+class gzstreambase : virtual public std::ios {
+protected:
+    gzstreambuf buf;
+public:
+    gzstreambase() { init(&buf); }
+    gzstreambase( const char* name, int open_mode);
+    ~gzstreambase();
+    void open( const char* name, int open_mode);
+    void close();
+    gzstreambuf* rdbuf() { return &buf; }
+};
+
+// ----------------------------------------------------------------------------
+// User classes. Use igzstream and ogzstream analogously to ifstream and
+// ofstream respectively. They read and write files based on the gz*
+// function interface of the zlib. Files are compatible with gzip compression.
+// ----------------------------------------------------------------------------
+
+class igzstream : public gzstreambase, public std::istream {
+public:
+    igzstream() : std::istream( &buf) {}
+    igzstream( const char* name, int open_mode = std::ios::in)
+        : gzstreambase( name, open_mode), std::istream( &buf) {}
+    gzstreambuf* rdbuf() { return gzstreambase::rdbuf(); }
+    void open( const char* name, int open_mode = std::ios::in) {
+        gzstreambase::open( name, open_mode);
+    }
+};
+
+class ogzstream : public gzstreambase, public std::ostream {
+public:
+    ogzstream() : std::ostream( &buf) {}
+    ogzstream( const char* name, int mode = std::ios::out)
+        : gzstreambase( name, mode), std::ostream( &buf) {}
+    gzstreambuf* rdbuf() { return gzstreambase::rdbuf(); }
+    void open( const char* name, int open_mode = std::ios::out) {
+        gzstreambase::open( name, open_mode);
+    }
+};
+
+#ifdef GZSTREAM_NAMESPACE
+} // namespace GZSTREAM_NAMESPACE
+#endif
+
+#endif // GZSTREAM_H
+// ============================================================================
+// EOF //
+