Mercurial > repos > yating-l > package_ucsc_bigbed_340

annotate tool_dependencies.xml @ 0:dd9b230c079d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
author yating-l
date Tue, 16 May 2017 16:22:42 -0400
parents
children a2130beceb1d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
1 <?xml version="1.0" ?>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
2 <tool_dependency>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
3 <package name="ucsc_bigbed" version="340">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
4 <install version="1.0">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
5 <actions_group>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
6 <actions os="darwin" architecture="x86_64">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
7 <action type="download_by_url"
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
8 sha256sum="cda7970e67eadd1bc0183740e1d8790f8769a57872d918973e2109722b904e83">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
9 http://old-gep.wustl.edu/~wilson/packages/ucsc_bigbed/ucsc_bigbed_340_macOS_x86_64.tar.gz
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
10 </action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
11 <action type="move_directory_files">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
12 <source_directory>bin</source_directory>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
13 <destination_directory>$INSTALL_DIR/bin</destination_directory>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
14 </action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
15 </actions>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
16
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
17 <actions os="linux" architecture="x86_64">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
18 <action type="download_by_url"
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
19 sha256sum="0489c496bf2bdb1374a7facf0ca546f3b5fcbd7d7caf5f909c85d2fcc873c99c">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
20 http://old-gep.wustl.edu/~wilson/packages/ucsc_bigbed/ucsc_bigbed_340_linux_x86_64.tar.gz
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
21 </action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
22 <action type="move_directory_files">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
23 <source_directory>bin</source_directory>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
24 <destination_directory>$INSTALL_DIR/bin</destination_directory>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
25 </action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
26 </actions>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
27
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
28 <!-- Display error message for unsupported OS and CPU architecture -->
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
29 <actions>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
30 <action type="shell_command">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
31 echo "ERROR: This package only supports 64-bit systems running macOS or Linux"
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
32 </action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
33 <action type="shell_command">false</action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
34 </actions>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
35
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
36 <!-- update $PATH environment variable -->
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
37 <action type="set_environment">
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
38 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
39 </action>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
40 </actions_group>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
41 </install>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
42 <readme>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
43 <![CDATA[
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
44 This package contains the utilities for constructing
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
45 `bigBed files <https://genome.ucsc.edu/goldenpath/help/bigBed.html>`_.
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
46 The utilities were created by the
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
47 `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
48 at the UCSC Genomics Institute.
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
49
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
50 The bigBed file format is designed to store annotation features that
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
51 consists of one or more components. It is based on the
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
52 `BED <https://genome.ucsc.edu/FAQ/FAQformat.html#format1>`_ file format.
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
53 ]]>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
54 </readme>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
55 </package>
dd9b230c079d planemo upload commit d7c267cd350a630f61aaf721b32c2f913d04c9d4
yating-l
parents:
diff changeset
56 </tool_dependency>