Mercurial > repos > yating-l > gonramp_apollo

annotate tool_dependencies.xml @ 0:cb8439d64ed3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
author yating-l
date Mon, 27 Nov 2017 14:40:53 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
1 <?xml version="1.0"?>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
2 <tool_dependency>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
3
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
4 <package name="apollo_api" version="3.0.3">
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
5 <install version="1.0">
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
6 <actions>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
7 <action type="download_by_url">https://github.com/galaxy-genome-annotation/python-apollo/archive/3.0.3.tar.gz</action>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
8 <action type="make_directory">$INSTALL_DIR/apollo</action>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
9 <action type="shell_command">
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
10 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/apollo &amp;&amp;
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
11 python setup.py install --install-lib $INSTALL_DIR/apollo
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
12 </action>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
13 <action type="set_environment">
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
14 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/apollo</environment_variable>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
15 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/apollo</environment_variable>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
16 </action>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
17 </actions>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
18 </install>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
19 </package>
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
20
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
21
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
22
cb8439d64ed3 planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 9009fa8663038d2cb4a1c5130600a51f31f654a1-dirty
yating-l
parents:
diff changeset
23 </tool_dependency>