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1 <?xml version="1.0" ?>
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2 <tool_dependency>
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3 <package name="ucsc_twobit" version="340">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions os="darwin" architecture="x86_64">
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7 <action type="download_by_url"
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8 sha256sum="aa0df6fc9c5dfe83cb94456e1100a5ecd7a247e7521d91f4e91c46c1b21fc9ab">
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9 http://old-gep.wustl.edu/~wilson/packages/ucsc_twobit/ucsc_twobit_340_macOS_x86_64.tar.gz
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10 </action>
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11 <action type="move_directory_files">
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12 <source_directory>bin</source_directory>
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13 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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14 </action>
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15 </actions>
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16
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17 <actions os="linux" architecture="x86_64">
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18 <action type="download_by_url"
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19 sha256sum="31b18fd6f0f24981815ded0a1790be49ca47a5d2cce40c3af29ffc6f5bea4922">
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20 http://old-gep.wustl.edu/~wilson/packages/ucsc_twobit/ucsc_twobit_340_linux_x86_64.tar.gz
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21 </action>
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22 <action type="move_directory_files">
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23 <source_directory>bin</source_directory>
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24 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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25 </action>
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26 </actions>
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27
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28 <!-- Display error message for unsupported OS and CPU architecture -->
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29 <actions>
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30 <action type="shell_command">
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31 echo "ERROR: This package only supports 64-bit systems running macOS or Linux"
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32 </action>
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33 <action type="shell_command">false</action>
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34 </actions>
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35
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36 <!-- update $PATH environment variable -->
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37 <action type="set_environment">
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38 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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39 </action>
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40 </actions_group>
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41 </install>
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42 <readme>
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43 <![CDATA[
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44 This package contains the utilities for constructing and manipulating
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45 `twoBit files <https://genome.ucsc.edu/goldenpath/help/twoBit.html>`_.
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46 The utilities were created by the
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47 `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_
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48 at the UCSC Genomics Institute.
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49
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50 The twoBit file format is designed to store genomic sequences and the
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51 associated repeat masking information. The twoBit file is used by the
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52 UCSC Genome Browser and by tools such as
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53 `BLAT <https://genome.ucsc.edu/goldenpath/help/blatSpec.html>`_.
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54 ]]>
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55 </readme>
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56 </package>
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57 </tool_dependency>
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