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1 <tool id="bgzip" name="Bgzip" version="1.0.0">
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2 <description>Run bgzip compression on file </description>
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29
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3 <requirements>
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4 <requirement type="package" version="0.2.6">tabix</requirement>
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5 </requirements>
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6 <command>
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7 bgzip -c -f $input> $output
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8 </command>
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9 <inputs>
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10 <param name="input" type="data" label="Input file" />
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11 </inputs>
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12 <outputs>
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13 <data name="output" format="bgzip" label="${tool.name} on ${on_string}">
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14 <change_format>
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15 <when input="$input.ext" value="vcf" format="vcf_bgzip" />
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16 </change_format>
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17 </data>
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18 </outputs>
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19 <help>
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20 **About this tool**
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21
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22 **Bgzip**: Block compression/decompression utility. Outputs compressed (bgzipped) version of input file.
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23
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24 More info here: http://www.htslib.org/doc/tabix.html
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25 </help>
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26 </tool>
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