Mercurial > repos > trinity_ctat > test_ctat_genome_res_lib_dm

changeset 18:d3fce82fbe92 draft

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Uploaded
author trinity_ctat
date Mon, 02 Jul 2018 16:59:12 -0400
parents 9218bd8f7d99
children 16e4b119edd8
files data_manager/add_ctat_resource_lib.xml
diffstat 1 files changed, 12 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/add_ctat_resource_lib.xml	Mon Jul 02 16:50:48 2018 -0400
+++ b/data_manager/add_ctat_resource_lib.xml	Mon Jul 02 16:59:12 2018 -0400
@@ -12,13 +12,24 @@
           python $__tool_directory__/add_ctat_resource_lib.py 
             --output_filename "${out_file}" 
             --display_name "${display_name}" 
+            #if str( $genome_resource_library.download ) == "true":
+                --download_url "${genome_resource_library.download_url}" 
+                --download_location "${genome_resource_library.download_destination}"
+                #if str( $genome_resource_library.force_new_download ) == "true":
+                    --new_archive_download
+                #end if
+            #else
                 #if str( ${genome_resource_library.library_status.needs_build} ) == "true":
                     --source_location "${genome_resource_library.library_status.source_location}"
                     #if str( $genome_resource_library.library_status.rebuild ) == "true":
                         --rebuild
                     #end if
-                #endif
+                #end if
                 --build_location "${genome_resource_library.built_library_location}" 
+            #end if
+            #if str( $gmap_build ) == "true":
+                --gmap_build 
+            #end if
         ]]>
     </command>
     <inputs>