Mercurial > repos > trinity_ctat > edger_differential_expression

comparison EdgeR_differentialExpression.xml @ 5:d66c05101513 draft default tip

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Adding profile info and exit code behavior. Making version numbers consistent. Upping test number.
author trinity_ctat
date Fri, 06 Oct 2017 10:57:25 -0400
parents bfd09008aae7
children
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4:bfd09008aae7 5:d66c05101513
1 <tool id="EdgeR_differentialExpression" name="EdgeR_differentialExpression" version="1.0.0"> 1 <tool id="EdgeR_differentialExpression" name="EdgeR_differentialExpression" version="1.0.0" profile="17.05">
2 2
3 <description>Identify Differentially Expressed Transcripts Using EdgeR</description> 3 <description>Identify Differentially Expressed Transcripts Using EdgeR</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
6 <requirement type="package" version="1.3.0">rsem</requirement> 6 <requirement type="package" version="1.3.0">rsem</requirement>
7 <requirement type="package" version="3">bioconductor-edger</requirement>
7 <requirement type="package">trinity</requirement> 8 <requirement type="package">trinity</requirement>
8 </requirements> 9 </requirements>
9 <command> 10 <command detect_errors="exit_code">
10 <![CDATA[ 11 <![CDATA[
11 python $__tool_directory__/EdgeR_differentialExpression_wrapper.py 12 python $__tool_directory__/EdgeR_differentialExpression_wrapper.py
12 $counts_matrix 13 $counts_matrix
13 $dispersion 14 $dispersion
14 ]]> 15 ]]>