Mercurial > repos > trinity_ctat > edger_differential_expression

changeset 5:d66c05101513 draft default tip

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Adding profile info and exit code behavior. Making version numbers consistent. Upping test number.
author trinity_ctat
date Fri, 06 Oct 2017 10:57:25 -0400
parents bfd09008aae7
children
files EdgeR_differentialExpression.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/EdgeR_differentialExpression.xml	Mon Oct 02 14:58:26 2017 -0400
+++ b/EdgeR_differentialExpression.xml	Fri Oct 06 10:57:25 2017 -0400
@@ -1,12 +1,13 @@
-<tool id="EdgeR_differentialExpression" name="EdgeR_differentialExpression" version="1.0.0">
+<tool id="EdgeR_differentialExpression" name="EdgeR_differentialExpression" version="1.0.0" profile="17.05">
 
     <description>Identify Differentially Expressed Transcripts Using EdgeR</description>
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package" version="1.3.0">rsem</requirement>
+        <requirement type="package" version="3">bioconductor-edger</requirement>
         <requirement type="package">trinity</requirement>
     </requirements>
-    <command>
+    <command detect_errors="exit_code">
         <![CDATA[
  		python $__tool_directory__/EdgeR_differentialExpression_wrapper.py 
 			$counts_matrix