Mercurial > repos > trinity_ctat > ctat_fusion_inspector

changeset 3:1f894f083a45 draft

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Updating fusion-inspector, because --align_utils STAR is not valid flag anymore. Changed Star-Fusion to require Star 2.5.4a.
author trinity_ctat
date Thu, 17 May 2018 16:33:58 -0400
parents b5be90bbe415
children 8adc737a62a6
files ctat_fusion_inspector.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/ctat_fusion_inspector.xml	Wed May 16 14:47:37 2018 -0400
+++ b/ctat_fusion_inspector.xml	Thu May 17 16:33:58 2018 -0400
@@ -1,3 +1,4 @@
+p
 <tool id="ctat_fusion_inspector" name="ctat_fusion_inspector" version="1.0.0" profile="17.05">
     <description>In silico Validation of Fusion Transcript Predictions</description>
     <requirements>
@@ -13,7 +14,6 @@
       --out_dir "subdir"
       --out_prefix "finspector" 
       --prep_for_IGV 
-      --align_utils STAR
       #if $trinity_status.trinity=="true"
       --include_Trinity
       #end if