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comparison ctat_edger_differential_expression.xml @ 1:57907c40385c draft default tip

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Updating tools requirements.
author trinity_ctat
date Wed, 27 Jun 2018 14:12:38 -0400
parents f77032cd0463
children
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0:f77032cd0463 1:57907c40385c
2 2
3 <description>Identify Differentially Expressed Transcripts Using EdgeR</description> 3 <description>Identify Differentially Expressed Transcripts Using EdgeR</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
6 <requirement type="package">subprocess32</requirement> 6 <requirement type="package">subprocess32</requirement>
7 <requirement type="package">samtools</requirement>
8 <requirement type="package">bzip2</requirement> 7 <requirement type="package">bzip2</requirement>
9 <requirement type="package" version="1.3.0">rsem</requirement> 8 <requirement type="package" version="1.3.0">rsem</requirement>
10 <requirement type="package" version="3">bioconductor-edger</requirement> 9 <requirement type="package" version="3">bioconductor-edger</requirement>
11 <requirement type="package" version="2">bioconductor-qvalue</requirement> 10 <requirement type="package" version="2">bioconductor-qvalue</requirement>
12 <requirement type="package" version="2.5.1">trinity</requirement> 11 <requirement type="package" version="2.6.6">trinity</requirement>
13 </requirements> 12 </requirements>
14 <command detect_errors="exit_code"> 13 <command detect_errors="exit_code">
15 <![CDATA[ 14 <![CDATA[
16 python $__tool_directory__/ctat_edger_differential_expression.py 15 python $__tool_directory__/ctat_edger_differential_expression.py
17 $counts_matrix 16 $counts_matrix