Mercurial > repos > trinity_ctat > ctat_centrifuge_index_data_manager

changeset 27:cdd963ca4bbb draft

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Uploaded
author trinity_ctat
date Tue, 01 May 2018 09:38:17 -0400
parents bf41e354f359
children 3316f620b48e
files data_manager/add_ctat_centrifuge_index.py
diffstat 1 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/add_ctat_centrifuge_index.py	Tue May 01 09:31:18 2018 -0400
+++ b/data_manager/add_ctat_centrifuge_index.py	Tue May 01 09:38:17 2018 -0400
@@ -79,20 +79,20 @@
     # ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz
     # ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p+h+v.tar.gz
     # Which could be hard coded:
-    # vals.append(("p_compressed+h+v", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz", True))
-    # vals.append(("p+h+v", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p+h+v.tar.gz", False))
-    # vals.append(("nt_2018_3_3", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/nt_2018_3_3.tar.gz", False))
-    # vals.append(("p_compressed_2018_4_15", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed_2018_4_15.tar.gz", False))
+    # options.append(("p_compressed+h+v", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed+h+v.tar.gz", True))
+    # options.append(("p+h+v", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p+h+v.tar.gz", False))
+    # options.append(("nt_2018_3_3", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/nt_2018_3_3.tar.gz", False))
+    # options.append(("p_compressed_2018_4_15", "ftp://ftp.ccb.jhu.edu/pub/infphilo/centrifuge/data/p_compressed_2018_4_15.tar.gz", False))
     # but only returning the one we want, which for now is assumed to be present.
     # For now, I am printing the list, just so I can see what was returned, 
     print "FYI: The URL's that were found on Centrifuge's page are:"
     print "\t" + "\n\t".join(filelist_parser.filenames)
     # For now instead of sending back the list of found URL's, send back the one URL we want.
     # Currently, only one of the options is supported.
-    vals.append((_CTAT_CentrifugeDir_Name, _CTAT_CentrifugeDownload_URL, True))
+    options.append((_CTAT_CentrifugeDir_Name, _CTAT_CentrifugeDownload_URL, True))
     print "The items in vals are:"
-    print str(vals)
-    return vals 
+    print str(options)
+    return options 
 
 # The following was used by the example program to get input parameters through the json.
 # Just leaving here for reference.