Mercurial > repos > trinity_ctat > align_and_estimate_abundance

changeset 12:a130d5b5f34b draft

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Added tool directory to path of trinityToolWrapper.py
author trinity_ctat
date Tue, 26 Sep 2017 23:11:20 -0400
parents 2e0e45063fad
children 321a69419c77
files align_and_estimate_abundance.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/align_and_estimate_abundance.xml	Tue Sep 26 22:56:18 2017 -0400
+++ b/align_and_estimate_abundance.xml	Tue Sep 26 23:11:20 2017 -0400
@@ -12,7 +12,7 @@
 
     <command>
         <![CDATA[
-        python trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir  "subdir" 
+        python $__tool_directory__/trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir  "subdir" 
 
         ## Inputs.
         #if str($inputs.paired_or_single) == "paired":