# HG changeset patch
# User trinity_ctat
# Date 1506481880 14400
# Node ID a130d5b5f34b90ddb7983c7ce8a711ed7dddbd2b
# Parent  2e0e45063fad428aa6ba70a6197fa850a45f82b9
Added tool directory to path of trinityToolWrapper.py

diff -r 2e0e45063fad -r a130d5b5f34b align_and_estimate_abundance.xml
--- a/align_and_estimate_abundance.xml	Tue Sep 26 22:56:18 2017 -0400
+++ b/align_and_estimate_abundance.xml	Tue Sep 26 23:11:20 2017 -0400
@@ -12,7 +12,7 @@
 
     <command>
         <![CDATA[
-        python trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir  "subdir" 
+        python $__tool_directory__/trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir  "subdir" 
 
         ## Inputs.
         #if str($inputs.paired_or_single) == "paired":