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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit f9591483bef88aef71a9f0cc0ffc75cf6eab480c
author tomnl
date Mon, 05 Mar 2018 10:05:57 -0500
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children e2635fa802bd
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<tool id="track_rt_raw" name="track_rt_raw" version="0.0.7">

        <requirements>
           <requirement type="package" version="1.4.1" >bioconductor-mspurity</requirement>
           <requirement type="package" version="1.4.4" >r-optparse</requirement>
            <yield />
        </requirements>

    <description>Track the raw retention time in the peak slot of XCMSset objects.
    </description>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command interpreter="Rscript"><![CDATA[
        track_rt_raw.R
            --xset_path=$xset
            --out_dir=.

    ]]></command>
    <inputs>

        <param type="data" name="xset"
                help="xcmsSet object saved as an RData file"/>

    </inputs>
    <outputs>

        <data name="xset_with_rt_raw" format="rdata" label="xset.track_rt_raw.RData"
              from_work_dir="xset_rt_raw_tracked.RData" visible="true"/>
    </outputs>
    <tests>

    </tests>
    <help><![CDATA[]]></help>
</tool>