Mercurial > repos > tomnl > track_rt_raw
comparison track_rt_raw.xml @ 0:b96fc0da0a32 draft
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit f9591483bef88aef71a9f0cc0ffc75cf6eab480c
| author | tomnl |
|---|---|
| date | Mon, 05 Mar 2018 10:05:57 -0500 |
| parents | |
| children | e2635fa802bd |
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| -1:000000000000 | 0:b96fc0da0a32 |
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| 1 <tool id="track_rt_raw" name="track_rt_raw" version="0.0.7"> | |
| 2 | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.4.1" >bioconductor-mspurity</requirement> | |
| 5 <requirement type="package" version="1.4.4" >r-optparse</requirement> | |
| 6 <yield /> | |
| 7 </requirements> | |
| 8 | |
| 9 <description>Track the raw retention time in the peak slot of XCMSset objects. | |
| 10 </description> | |
| 11 <stdio> | |
| 12 <exit_code range="1:" /> | |
| 13 </stdio> | |
| 14 <command interpreter="Rscript"><![CDATA[ | |
| 15 track_rt_raw.R | |
| 16 --xset_path=$xset | |
| 17 --out_dir=. | |
| 18 | |
| 19 ]]></command> | |
| 20 <inputs> | |
| 21 | |
| 22 <param type="data" name="xset" | |
| 23 help="xcmsSet object saved as an RData file"/> | |
| 24 | |
| 25 </inputs> | |
| 26 <outputs> | |
| 27 | |
| 28 <data name="xset_with_rt_raw" format="rdata" label="xset.track_rt_raw.RData" | |
| 29 from_work_dir="xset_rt_raw_tracked.RData" visible="true"/> | |
| 30 </outputs> | |
| 31 <tests> | |
| 32 | |
| 33 </tests> | |
| 34 <help><![CDATA[]]></help> | |
| 35 </tool> |