Mercurial > repos > tduigou > parameters_maystro_workflow_2

annotate test-data/test-JSON_workflow1.json @ 1:813aec57e9fd draft default tip

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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
author tduigou
date Thu, 31 Jul 2025 08:58:02 +0000
parents 4e2ae28020f7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
1 {
1
813aec57e9fd planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
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2 "avoid_patterns": "BsaI_site\nBsmBI_site\nBbsI_site\nSapI_site\n8x1mer\n5x3mer\n9x2mer",
813aec57e9fd planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
3 "hairpin_constraints": "stem_size=20, hairpin_window=200",
813aec57e9fd planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
4 "gc_constraints": "mini=0.1, maxi=0.9,, window=100\nmini=0.3, maxi=0.7, window=100",
813aec57e9fd planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
5 "kmer_size": "15",
0
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
6 "execution": "true",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
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7 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
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8 "table": "sample",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
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9 "fragment_column": "fragment",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
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10 "sequence_column": "sequence",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
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11 "annotation_column": "annotation",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
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12 "assembly_plan_name": "Type2sRestrictionAssembly",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
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13 "topology": "circular",
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
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14 "enzyme": "auto"
4e2ae28020f7 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
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15 }