Mercurial > repos > tduigou > parameters_maystro

annotate output.json @ 1:34135dac85b0 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
author tduigou
date Wed, 16 Jul 2025 14:28:21 +0000
parents 1a766d8d3883
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
1 {
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
2 "summary": {
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
3 "num_errors": 0,
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
4 "num_failures": 0,
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
5 "num_skips": 0,
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
6 "num_tests": 2
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
7 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
8 "tests": [
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
9 {
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
10 "data": {
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
11 "inputs": {
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
12 "annotation_column": "annotation",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
13 "avoid_patterns": "BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
14 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
15 "execution": true,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
16 "fragment_column": "fragment",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
17 "gc_constraints": "mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
18 "hairpin_constraints": "stem_size=20, hairpin_window=200",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
19 "kmer_size": "15",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
20 "sequence_column": "sequence",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
21 "table_name": "sample"
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
22 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
23 "job": {
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
24 "command_line": "python3 -c \"import json; params = { 'avoid_patterns': 'BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer', 'hairpin_constraints': 'stem_size=20, hairpin_window=200', 'gc_constraints': 'mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100', 'kmer_size': '15', 'execution': 'true', 'db_uri': 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db', 'table': 'sample', 'fragment_column': 'fragment', 'sequence_column': 'sequence', 'annotation_column': 'annotation' }; f = open('/tmp/tmpojrs64js/job_working_directory/000/1/outputs/dataset_ba54b8e6-58da-4f46-ab17-8f0c4d46bb3c.dat', 'w'); json.dump(params, f, indent=4); f.close()\" && echo DEBG && cat '/tmp/tmpojrs64js/job_working_directory/000/1/outputs/dataset_ba54b8e6-58da-4f46-ab17-8f0c4d46bb3c.dat' && echo DEBG && cat '/tmp/tmpojrs64js/job_working_directory/000/1/outputs/dataset_ba54b8e6-58da-4f46-ab17-8f0c4d46bb3c.dat'",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
25 "command_version": "",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
26 "copied_from_job_id": null,
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
27 "create_time": "2025-07-16T14:25:13.835798",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
28 "dependencies": [],
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
29 "exit_code": 0,
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
30 "external_id": "153937",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
31 "galaxy_version": "25.0",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
32 "handler": null,
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
33 "history_id": "479ca6463d0132e0",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
34 "id": "479ca6463d0132e0",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
35 "inputs": {},
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
36 "job_messages": [],
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
37 "job_metrics": [],
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
38 "job_runner_name": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
39 "job_stderr": "",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
40 "job_stdout": "",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
41 "model_class": "Job",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
42 "output_collections": {},
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
43 "outputs": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
44 "output_json": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
45 "id": "479ca6463d0132e0",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
46 "src": "hda",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
47 "uuid": "ba54b8e6-58da-4f46-ab17-8f0c4d46bb3c"
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
48 }
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
49 },
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
50 "params": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
51 "__input_ext": "\"input\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
52 "annotation_column": "\"annotation\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
53 "avoid_patterns": "\"BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
54 "chromInfo": "\"/tmp/tmpojrs64js/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
55 "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
56 "dbkey": "\"?\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
57 "execution": "true",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
58 "fragment_column": "\"fragment\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
59 "gc_constraints": "\"mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
60 "hairpin_constraints": "\"stem_size=20, hairpin_window=200\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
61 "kmer_size": "\"15\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
62 "sequence_column": "\"sequence\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
63 "table_name": "\"sample\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
64 "user_json": null
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
65 },
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
66 "state": "ok",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
67 "stderr": "",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
68 "stdout": "DEBG\n{\n \"avoid_patterns\": \"BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer\",\n \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100\",\n \"kmer_size\": \"15\",\n \"execution\": \"true\",\n \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"table\": \"sample\",\n \"fragment_column\": \"fragment\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\"\n}DEBG\n{\n \"avoid_patterns\": \"BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer\",\n \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100\",\n \"kmer_size\": \"15\",\n \"execution\": \"true\",\n \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"table\": \"sample\",\n \"fragment_column\": \"fragment\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\"\n}",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
69 "tool_id": "parameters_maystro",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
70 "tool_stderr": "",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
71 "tool_stdout": "DEBG\n{\n \"avoid_patterns\": \"BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer\",\n \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100\",\n \"kmer_size\": \"15\",\n \"execution\": \"true\",\n \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"table\": \"sample\",\n \"fragment_column\": \"fragment\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\"\n}DEBG\n{\n \"avoid_patterns\": \"BsaI_site BsmBI_site BbsI_site SapI_site 8x1mer 5x3mer 9x2mer\",\n \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100 mini=0.1, maxi=0.9, window=100\",\n \"kmer_size\": \"15\",\n \"execution\": \"true\",\n \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"table\": \"sample\",\n \"fragment_column\": \"fragment\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\"\n}",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
72 "update_time": "2025-07-16T14:25:27.820187",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
73 "user_email": "planemo@galaxyproject.org",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
74 "user_id": "479ca6463d0132e0"
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
75 },
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
76 "status": "success",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
77 "test_index": 0,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
78 "time_seconds": 14.118565320968628,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
79 "tool_id": "parameters_maystro",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
80 "tool_version": "1.1.0+galaxy3"
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
81 },
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
82 "has_data": true,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
83 "id": "parameters_maystro-0"
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
84 },
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
85 {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
86 "data": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
87 "inputs": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
88 "user_json": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
89 "id": "0311cb8bec9eec65",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
90 "src": "hda"
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
91 }
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
92 },
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
93 "job": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
94 "command_line": "cp '/tmp/tmpojrs64js/files/a/6/4/dataset_a64b8b4b-290b-4b2e-bf77-d0d4ebc35137.dat' '/tmp/tmpojrs64js/job_working_directory/000/3/outputs/dataset_0dedeb7c-7969-452f-a162-25e70662b775.dat' && echo DEBG && cat '/tmp/tmpojrs64js/job_working_directory/000/3/outputs/dataset_0dedeb7c-7969-452f-a162-25e70662b775.dat'",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
95 "command_version": "",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
96 "copied_from_job_id": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
97 "create_time": "2025-07-16T14:25:36.982208",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
98 "dependencies": [],
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
99 "exit_code": 0,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
100 "external_id": "154115",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
101 "galaxy_version": "25.0",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
102 "handler": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
103 "history_id": "0311cb8bec9eec65",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
104 "id": "da029efde06939a6",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
105 "inputs": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
106 "user_json": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
107 "id": "0311cb8bec9eec65",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
108 "src": "hda",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
109 "uuid": "a64b8b4b-290b-4b2e-bf77-d0d4ebc35137"
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
110 }
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
111 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
112 "job_messages": [],
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
113 "job_metrics": [],
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
114 "job_runner_name": null,
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
115 "job_stderr": "",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
116 "job_stdout": "",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
117 "model_class": "Job",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
118 "output_collections": {},
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
119 "outputs": {
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
120 "output_json": {
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
121 "id": "da029efde06939a6",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
122 "src": "hda",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
123 "uuid": "0dedeb7c-7969-452f-a162-25e70662b775"
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
124 }
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
125 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
126 "params": {
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
127 "__input_ext": "\"input\"",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
128 "annotation_column": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
129 "avoid_patterns": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
130 "chromInfo": "\"/tmp/tmpojrs64js/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
131 "db_uri": null,
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
132 "dbkey": "\"?\"",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
133 "execution": "false",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
134 "fragment_column": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
135 "gc_constraints": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
136 "hairpin_constraints": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
137 "kmer_size": "\"\"",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
138 "sequence_column": null,
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
139 "table_name": null
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
140 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
141 "state": "ok",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
142 "stderr": "",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
143 "stdout": "DEBG\n{\n \"avoid_patterns\": \"BsaI_site\\nBsmBI_site\\nBbsI_site\\nSapI_site\\n8x1mer\\n5x3mer\\n9x2mer\",\n \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100\\nmini=0.1, maxi=0.9, window=100\",\n \"kmer_size\": \"15\",\n \"execution\": \"true\",\n \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\",\n \"table\": \"sample\",\n \"fragment_column\": \"fragment\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\"\n}\n",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
144 "tool_id": "parameters_maystro",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
145 "tool_stderr": "",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
146 "tool_stdout": "DEBG\n{\n \"avoid_patterns\": \"BsaI_site\\nBsmBI_site\\nBbsI_site\\nSapI_site\\n8x1mer\\n5x3mer\\n9x2mer\",\n \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100\\nmini=0.1, maxi=0.9, window=100\",\n \"kmer_size\": \"15\",\n \"execution\": \"true\",\n \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\",\n \"table\": \"sample\",\n \"fragment_column\": \"fragment\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\"\n}\n",
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
147 "update_time": "2025-07-16T14:25:42.101497",
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
148 "user_email": "planemo@galaxyproject.org",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
149 "user_id": "479ca6463d0132e0"
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
150 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
151 "status": "success",
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
152 "test_index": 1,
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
153 "time_seconds": 14.252628803253174,
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
154 "tool_id": "parameters_maystro",
1
34135dac85b0 planemo upload for repository https://github.com/brsynth commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
tduigou
parents: 0
diff changeset
155 "tool_version": "1.1.0+galaxy3"
0
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
156 },
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
157 "has_data": true,
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
158 "id": "parameters_maystro-1"
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
159 }
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
160 ],
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
161 "version": "0.1"
1a766d8d3883 planemo upload for repository https://github.com/brsynth commit fa4c85dd6ad48d404a28e21667f18b628bbdc702-dirty
tduigou
parents:
diff changeset
162 }