Mercurial > repos > tduigou > icfree_instructor

comparison instructor.xml @ 6:df5b3f40c0b6 draft

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planemo upload for repository https://github.com/brsynth/icfree-ml commit bb700d24e25b280f75f17f0a25f91062688cbad7
author tduigou
date Wed, 15 Mar 2023 10:06:51 +0000
parents 190889521a9e
children 6f8e7e811333
comparison
equal deleted inserted replaced
5:190889521a9e 6:df5b3f40c0b6
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio"/> 7 <expand macro="stdio"/>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 #set sps = [] 9 #set sps = []
10 #for $x in $source_plates.keys(): 10 #for $x in $source_plates:
11 ln -sfn $source_plates[$x] '.' && 11 ln -sfn '$x' '$x.element_identifier' &&
12 #silent sps.append(str($x)) 12 #silent sps.append(str($x.element_identifier))
13 #end for 13 #end for
14 #set s_sps = '" "'.join(sps) 14 #set s_sps = '" "'.join(sps)
15 #set sws = [] 15 #set sws = []
16 #for $x in $source_wells.keys(): 16 #for $x in $source_wells:
17 ln -sfn $source_wells[$x] '.' && 17 ln -sfn '$x' '$x.element_identifier' &&
18 #silent sws.append(str($x)) 18 #silent sws.append(str($x.element_identifier))
19 #end for 19 #end for
20 #set s_sws = '" "'.join(sws) 20 #set s_sws = '" "'.join(sws)
21 #set dps = [] 21 #set dps = []
22 #for $x in $dest_plates.keys(): 22 #for $x in $dest_plates:
23 ln -sfn $dest_plates[$x] '.' && 23 ln -sfn '$x' '$x.element_identifier' &&
24 #silent dps.append(str($x)) 24 #silent dps.append(str($x.element_identifier))
25 #end for 25 #end for
26 #set s_dps = '" "'.join(dps) 26 #set s_dps = '" "'.join(dps)
27 #set dws = [] 27 #set dws = []
28 #for $x in $dest_wells.keys(): 28 #for $x in $dest_wells:
29 ln -sfn $dest_wells[$x] '.' && 29 ln -sfn '$x' '$x.element_identifier' &&
30 #silent dws.append(str($x)) 30 #silent dws.append(str($x.element_identifier))
31 #end for 31 #end for
32 #set s_dws = '" "'.join(dws) 32 #set s_dws = '" "'.join(dws)
33 python -m icfree.instructor 33 python -m icfree.instructor
34 --source_plates '$s_sps' 34 --source_plates '$s_sps'
35 --source_wells '$s_sws' 35 --source_wells '$s_sws'