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changeset 19:4eba03628711 draft

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"planemo upload for repository https://github.com/rolfverberg/galaxytools commit 191fdd4eed8093f5cb5262fc1ff8275a242d69cd"
author rv43
date Mon, 18 Apr 2022 16:25:31 +0000
parents b0a816c8f66c
children c033f8843dc0
files tomo.py tomo_setup.xml
diffstat 2 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tomo.py	Mon Apr 18 15:13:20 2022 +0000
+++ b/tomo.py	Mon Apr 18 16:25:31 2022 +0000
@@ -1511,8 +1511,6 @@
                 logging.info(f'Saving preprocessed tomography stack to {output_name} ...')
                 save_stacks = {f'set_{stack["index"]}':tomo_stack
                         for stack,tomo_stack in zip(stacks,self.tomo_stacks)}
-                logging.info(f'output_name = {output_name}')
-                logging.info(f'save_stacks = {save_stacks}')
                 np.savez(output_name, **save_stacks)
                 logging.info(f'... done in {time()-t0:.2f} seconds!')
 
--- a/tomo_setup.xml	Mon Apr 18 15:13:20 2022 +0000
+++ b/tomo_setup.xml	Mon Apr 18 16:25:31 2022 +0000
@@ -14,7 +14,7 @@
         --bright 'bright_field.png'
         --tomo 'tomo.png'
         --detectorbounds 'detectorbounds.png'
-        --output_data 'output.npz'
+        --output_data 'output_data.npz'
         --output_config 'output_config.yaml'
         -l '$log'
 #for $s in $tomo_sets# ${s.offset} ${s.num} #end for