# HG changeset patch # User rv43 # Date 1650299131 0 # Node ID 4eba03628711ad2e802f05ef45420a9befa717ae # Parent b0a816c8f66c68c695f4559b56df71b975731062 "planemo upload for repository https://github.com/rolfverberg/galaxytools commit 191fdd4eed8093f5cb5262fc1ff8275a242d69cd" diff -r b0a816c8f66c -r 4eba03628711 tomo.py --- a/tomo.py Mon Apr 18 15:13:20 2022 +0000 +++ b/tomo.py Mon Apr 18 16:25:31 2022 +0000 @@ -1511,8 +1511,6 @@ logging.info(f'Saving preprocessed tomography stack to {output_name} ...') save_stacks = {f'set_{stack["index"]}':tomo_stack for stack,tomo_stack in zip(stacks,self.tomo_stacks)} - logging.info(f'output_name = {output_name}') - logging.info(f'save_stacks = {save_stacks}') np.savez(output_name, **save_stacks) logging.info(f'... done in {time()-t0:.2f} seconds!') diff -r b0a816c8f66c -r 4eba03628711 tomo_setup.xml --- a/tomo_setup.xml Mon Apr 18 15:13:20 2022 +0000 +++ b/tomo_setup.xml Mon Apr 18 16:25:31 2022 +0000 @@ -14,7 +14,7 @@ --bright 'bright_field.png' --tomo 'tomo.png' --detectorbounds 'detectorbounds.png' - --output_data 'output.npz' + --output_data 'output_data.npz' --output_config 'output_config.yaml' -l '$log' #for $s in $tomo_sets# ${s.offset} ${s.num} #end for