Mercurial > repos > rv43 > chess_tomo

diff tomo_reconstruct.xml @ 24:0891477bcb16 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Tue, 21 Mar 2023 17:40:36 +0000
parents fbbd82938303
children 551d1ea2416d
line wrap: on
line diff
--- a/tomo_reconstruct.xml	Tue Mar 21 16:47:44 2023 +0000
+++ b/tomo_reconstruct.xml	Tue Mar 21 17:40:36 2023 +0000
@@ -12,12 +12,22 @@
             --center_file "$center_file"
             --output_file "output.nex"
             --galaxy_flag
+            --x_bounds $x_bounds.low $x_bounds.upp
+            --y_bounds $y_bounds.low $y_bounds.upp
             -l "$log"
         ]]>
     </command>
     <inputs>
         <param name="input_file" type="data" format="nex" optional="false" label="Reduced tomography data"/>
         <param name="center_file" type="data" format="yaml" optional="false" label="Center axis input file"/>
+        <section name="x_bounds" title="Boundaries of reconstructed images in x-direction">
+            <param name="low" type="integer" value="-1" label="Lower bound"/>
+            <param name="upp" type="integer" value="-1" label="Upper bound"/>
+        </section>
+        <section name="y_bounds" title="Boundaries of reconstructed images in y-direction">
+            <param name="low" type="integer" value="-1" label="Lower bound"/>
+            <param name="upp" type="integer" value="-1" label="Upper bound"/>
+        </section>
     </inputs>
     <outputs>
         <expand macro="common_outputs"/>