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comparison tomo_reconstruct.xml @ 24:0891477bcb16 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Tue, 21 Mar 2023 17:40:36 +0000
parents fbbd82938303
children 551d1ea2416d
comparison
equal deleted inserted replaced
23:fbbd82938303 24:0891477bcb16
10 $__tool_directory__/tomo_reconstruct.py 10 $__tool_directory__/tomo_reconstruct.py
11 --input_file "$input_file" 11 --input_file "$input_file"
12 --center_file "$center_file" 12 --center_file "$center_file"
13 --output_file "output.nex" 13 --output_file "output.nex"
14 --galaxy_flag 14 --galaxy_flag
15 --x_bounds $x_bounds.low $x_bounds.upp
16 --y_bounds $y_bounds.low $y_bounds.upp
15 -l "$log" 17 -l "$log"
16 ]]> 18 ]]>
17 </command> 19 </command>
18 <inputs> 20 <inputs>
19 <param name="input_file" type="data" format="nex" optional="false" label="Reduced tomography data"/> 21 <param name="input_file" type="data" format="nex" optional="false" label="Reduced tomography data"/>
20 <param name="center_file" type="data" format="yaml" optional="false" label="Center axis input file"/> 22 <param name="center_file" type="data" format="yaml" optional="false" label="Center axis input file"/>
23 <section name="x_bounds" title="Boundaries of reconstructed images in x-direction">
24 <param name="low" type="integer" value="-1" label="Lower bound"/>
25 <param name="upp" type="integer" value="-1" label="Upper bound"/>
26 </section>
27 <section name="y_bounds" title="Boundaries of reconstructed images in y-direction">
28 <param name="low" type="integer" value="-1" label="Lower bound"/>
29 <param name="upp" type="integer" value="-1" label="Upper bound"/>
30 </section>
21 </inputs> 31 </inputs>
22 <outputs> 32 <outputs>
23 <expand macro="common_outputs"/> 33 <expand macro="common_outputs"/>
24 <collection name="tomo_reconstruct_plots" type="list" label="Data recontructed images"> 34 <collection name="tomo_reconstruct_plots" type="list" label="Data recontructed images">
25 <discover_datasets pattern="__name_and_ext__" directory="tomo_reconstruct_plots"/> 35 <discover_datasets pattern="__name_and_ext__" directory="tomo_reconstruct_plots"/>