Mercurial > repos > rv43 > chess_tomo

comparison tomo_reduce.py @ 5:543dba81eb15 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c-dirty
author rv43
date Mon, 20 Mar 2023 18:54:48 +0000
parents 9aa288729b9a
children 05335876d167
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4:9aa288729b9a 5:543dba81eb15
71 logging.info(f'galaxy_flag = {args.galaxy_flag}') 71 logging.info(f'galaxy_flag = {args.galaxy_flag}')
72 logging.info(f'img_x_bounds = {args.img_x_bounds}') 72 logging.info(f'img_x_bounds = {args.img_x_bounds}')
73 logging.debug(f'log = {args.log}') 73 logging.debug(f'log = {args.log}')
74 logging.debug(f'is log stdout? {args.log is sys.stdout}') 74 logging.debug(f'is log stdout? {args.log is sys.stdout}')
75 logging.debug(f'log_level = {args.log_level}') 75 logging.debug(f'log_level = {args.log_level}')
76 return
77 76
78 # Instantiate Tomo object 77 # Instantiate Tomo object
79 tomo = Tomo(galaxy_flag=args.galaxy_flag) 78 tomo = Tomo(galaxy_flag=args.galaxy_flag)
80 79
81 # Read input file 80 # Read input file
82 data = tomo.read(args.input_file) 81 data = tomo.read(args.input_file)
82 print('data:\n{data.tree}')
83 return
83 84
84 # Generate reduced tomography images 85 # Generate reduced tomography images
85 data = tomo.gen_reduced_data(data, img_x_bounds=args.img_x_bounds) 86 data = tomo.gen_reduced_data(data, img_x_bounds=args.img_x_bounds)
86 87
87 # Write output file 88 # Write output file