Mercurial > repos > rv43 > chess_tomo

annotate run_tomo_combine @ 35:e6bf49af75bc draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/rolfverberg/galaxytools commit 19fefed1d90e6d214dc6eb6998ad11eee8233f24-dirty
author rv43
date Wed, 22 Mar 2023 16:52:56 +0000
parents 50923144fb56
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
33
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
1 #!/bin/bash
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
2
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
3 # From workflow
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
4 #python -m workflow run_tomo -i sobhani-3249-A_recon.nxs -o sobhani-3249-A_recon_combined.nxs -n 48 -s 'only' --combine_data
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
5 #python -m workflow run_tomo -i tenstom_1304r-1_one_stack_recon.nxs -o tenstom_1304r-1_one_stack_recon_combined.nxs -n 48 -s 'only' --combine_data
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
6 #python -m workflow run_tomo -i tenstom_1304r-1_recon.nxs -o tenstom_1304r-1_recon_combined.nxs -n 48 -s 'only' --combine_data
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
7
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
8 # As Galaxy tool:
50923144fb56 planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
rv43
parents:
diff changeset
9 python tomo_combine.py -i tenstom_1304r-1_recon.nxs -o tenstom_1304r-1_recon_combined.nxs --log_level INFO -l tomo.log --galaxy_flag