Mercurial > repos > rv43 > chess_tomo

diff run_tomo_combine @ 33:50923144fb56 draft

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planemo upload for repository https://github.com/rolfverberg/galaxytools commit f8c4bdb31c20c468045ad5e6eb255a293244bc6c
author rv43
date Wed, 22 Mar 2023 16:46:26 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/run_tomo_combine	Wed Mar 22 16:46:26 2023 +0000
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+#!/bin/bash
+
+# From workflow
+#python -m workflow run_tomo -i sobhani-3249-A_recon.nxs -o sobhani-3249-A_recon_combined.nxs -n 48 -s 'only' --combine_data
+#python -m workflow run_tomo -i tenstom_1304r-1_one_stack_recon.nxs -o tenstom_1304r-1_one_stack_recon_combined.nxs -n 48 -s 'only' --combine_data
+#python -m workflow run_tomo -i tenstom_1304r-1_recon.nxs -o tenstom_1304r-1_recon_combined.nxs -n 48 -s 'only' --combine_data
+
+# As Galaxy tool:
+python tomo_combine.py -i tenstom_1304r-1_recon.nxs -o tenstom_1304r-1_recon_combined.nxs --log_level INFO -l tomo.log --galaxy_flag