Mercurial > repos > rnateam > veinnarna_rnainverse

annotate rnainverse.xml @ 0:0ce6afccce9f draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
author rnateam
date Wed, 05 Oct 2016 04:58:41 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
1 <tool id="veinnarna_rnainverse" name="@EXECUTABLE@" version="@VERSION@.0">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
2 <description>Calculate RNA sequence from secondary structure</description>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
3 <macros>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
4 <token name="@EXECUTABLE@">RNAinverse</token>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
5 <import>macros.xml</import>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
6 </macros>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
7 <expand macro="requirements" />
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
8 <expand macro="stdio" />
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
9 <expand macro="version_command" />
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
10 <command>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
11 <![CDATA[
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
12 RNAinverse < '$input' > '$outfile'
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
13 --function=#echo ''.join(str($algo).split(','))
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
14 -R$reps
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
15 --final=$final
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
16 #if $varExists('$advancedOptions.nogu')
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
17 $advancedOptions.nogu
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
18 $advancedOptions.noclosinggu
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
19 $advancedOptions.notetra
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
20 #end if
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
21 ]]>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
22 </command>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
23 <inputs>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
24 <param format="fasta" name="input" type="data" label="Clustal alignment file"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
25 <param name="temperature" type="float" value="37.0" label="Temperature [°C]" help="-T"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
26
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
27 <param name="reps" type="integer" value="1" min="1" label="Find so many sequences that fold close to that structure" help="-R: This parameter could be negative to search for exact solutions, but in that case the program might not terminate. If you need this functionality contact your admin or run the program locally."/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
28
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
29 <param name="algo" type="select" multiple="true" display="checkboxes" label="Use these functions" argument="--function">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
30 <option value="m" selected="true">minimum energy</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
31 <option value="p">partition function</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
32 </param>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
33 <param name="final" type="float" value="0.0" label="If partition function is selected this value determines the convergence criterium." help="--final"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
34
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
35 <param name="dangling" type="select" label="how to treat dangling end energies" help="-d">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
36 <option value="2" selected="true">unpaired bases participate in all dangling ends (2)</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
37 <option value="0">ignore dangling ends (0)</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
38 <option value="1">unpaired bases participate in one dangling end only (1)</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
39 <option value="3">allow coaxial stacking (3)</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
40 </param>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
41
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
42 <conditional name="advancedOptions">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
43 <param name="advancedSelector" type="select" label="advanced options">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
44 <option value="basic">basic Options</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
45 <option value="advanced">advanced Options</option>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
46 </param>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
47 <when value="advanced">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
48 <param name="nogu" type="boolean" checked="false" truevalue="-noGU" falsevalue="" label="No GU pairing" help="--noGU don't allow pairing of G and U."/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
49 <param name="noclosinggu" type="boolean" checked="false" truevalue="--noClosingGU" falsevalue="" label="No GU pairing at the ends" help="--noClosingGU don't allow pairing of G and U at the ends of helices."/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
50 <param name="notetra" type="boolean" checked="false" truevalue="--noTetra" falsevalue="" label="No stabilization for loops, hairpins etc." help="--noTetra"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
51 </when>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
52 <when value="basic">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
53 </when>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
54 </conditional>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
55 </inputs>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
56 <outputs>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
57 <data format="txt" name="outfile"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
58 </outputs>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
59 <tests>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
60 <test>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
61 <param name="input" value="rnainverse_input1.clu"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
62 <output name="outfile">
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
63 <assert_contents>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
64 <has_line_matching expression="^gggccccnnaauun.*"/>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
65 </assert_contents>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
66 </output>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
67 </test>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
68 </tests>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
69 <help>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
70 <![CDATA[
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
71 **RNAinverse**
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
72
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
73 The program searches for sequences folding into a predefined structure, thereby inverting the folding algorithm. For each search the best sequence found and its Hamming distance to the start sequence are printed. If the the search was unsuccessful, a structure distance to the target is appended.
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
74
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
75
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
76 -----
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
77
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
78 **Input format**
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
79
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
80 Input is similar to a Fasta file. First line should be the structure in dot-bracket notation, second line the starting sequence. Lines with '>' in the beginning are treated as comments. Characters in the start sequence other than "AUGC" will be treated as wild cards and replaced by a random character. Any lower case characters in the start sequence will be kept fixed during the search. If necessary, the sequence will be elongated to the length of the structure. Thus a string of "N"s as well as a blank line specify a random start sequence.
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
81
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
82 ------
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
83
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
84 **Outputs**
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
85
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
86 - text output of each sequence with its Hamming distance and/or the energy if the partition function is selected
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
87
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
88 ]]>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
89 </help>
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
90 <expand macro="citations" />
0ce6afccce9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit d1bef7f37f272e3173c137fcb690364fee7e6d1f
rnateam
parents:
diff changeset
91 </tool>