Mercurial > repos > rnateam > paralyzer

diff test-data/input.ini @ 0:d4d72f60e8d6 draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
author rnateam
date Wed, 23 Oct 2019 19:07:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.ini	Wed Oct 23 19:07:59 2019 -0400
@@ -0,0 +1,22 @@
+#all values are the default ones
+BANDWIDTH=3
+CONVERSION=T>C
+MINIMUM_READ_COUNT_PER_GROUP=5
+MINIMUM_READ_COUNT_PER_CLUSTER=2
+MINIMUM_READ_COUNT_FOR_KDE=3
+MINIMUM_CLUSTER_SIZE=11
+MINIMUM_CONVERSION_LOCATIONS_FOR_CLUSTER=2
+MINIMUM_CONVERSION_COUNT_FOR_CLUSTER=2
+MINIMUM_READ_COUNT_FOR_CLUSTER_INCLUSION=1
+MINIMUM_READ_LENGTH=20
+MAXIMUM_NUMBER_OF_NON_CONVERSION_MISMATCHES=1
+
+EXTEND_BY_READ
+
+GENOME_2BIT_FILE=input.2bit
+SAM_FILE=input.sam=COLLAPSED
+
+OUTPUT_DISTRIBUTIONS_FILE=out.distribution
+OUTPUT_GROUPS_FILE=out.groups
+OUTPUT_CLUSTERS_FILE=out.clusters
+#OUTPUT_READS_FILE=out_PARalyzer_Utilized.sam