Mercurial > repos > rnateam > paralyzer

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
author rnateam
date Wed, 23 Oct 2019 19:07:59 -0400
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d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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diff changeset
1 #all values are the default ones
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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2 BANDWIDTH=3
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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3 CONVERSION=T>C
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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4 MINIMUM_READ_COUNT_PER_GROUP=5
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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5 MINIMUM_READ_COUNT_PER_CLUSTER=2
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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6 MINIMUM_READ_COUNT_FOR_KDE=3
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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7 MINIMUM_CLUSTER_SIZE=11
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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8 MINIMUM_CONVERSION_LOCATIONS_FOR_CLUSTER=2
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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9 MINIMUM_CONVERSION_COUNT_FOR_CLUSTER=2
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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10 MINIMUM_READ_COUNT_FOR_CLUSTER_INCLUSION=1
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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11 MINIMUM_READ_LENGTH=20
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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12 MAXIMUM_NUMBER_OF_NON_CONVERSION_MISMATCHES=1
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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13
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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14 EXTEND_BY_READ
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
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d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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16 GENOME_2BIT_FILE=input.2bit
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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17 SAM_FILE=input.sam=COLLAPSED
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
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18
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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19 OUTPUT_DISTRIBUTIONS_FILE=out.distribution
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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20 OUTPUT_GROUPS_FILE=out.groups
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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21 OUTPUT_CLUSTERS_FILE=out.clusters
d4d72f60e8d6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
rnateam
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22 #OUTPUT_READS_FILE=out_PARalyzer_Utilized.sam