|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <!-- ToDo can we get it easily without svn? Is this included in the final tarball? -->
|
|
|
3 <!-- svn checkout http://svn.code.sf.net/p/open-ms/code/THIRDPARTY/SEARCHENGINES/Linux/64bit/ _searchengines -->
|
|
|
4 <tool_dependency>
|
|
|
5 <package name="openms" version="2.0">
|
|
|
6 <install version="1.0">
|
|
|
7 <actions_group>
|
|
|
8 <actions architecture="x86_64" os="linux">
|
|
|
9 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/openms/openms-2.0-Linux-x86_64.tar.gz</action>
|
|
|
10 <action type="shell_command">openms-2.0-Linux-x86_64.tar.gz</action>
|
|
|
11 <action type="move_directory_files">
|
|
|
12 <source_directory>.</source_directory>
|
|
|
13 <destination_directory>$INSTALL_DIR</destination_directory>
|
|
|
14 </action>
|
|
|
15 <action type="set_environment">
|
|
|
16 <environment_variable action="set_to" name="OPENMS_ROOT_PATH">$INSTALL_DIR</environment_variable>
|
|
|
17 <environment_variable action="set_to" name="OPENMS_DATA_PATH">$INSTALL_DIR/share/OpenMS</environment_variable>
|
|
|
18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
19 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
|
|
|
20 </action>
|
|
|
21 </actions>
|
|
|
22 <actions architecture="x86_64" os="darwin">
|
|
|
23 <action type="download_by_url">https://github.com/OpenMS/OpenMS/archive/develop.tar.gz</action>
|
|
|
24 <action type="download_by_url">https://github.com/OpenMS/contrib/archive/master.tar.gz</action>
|
|
|
25 <action type="shell_command">mv contrib-master ../contrib</action>
|
|
|
26 <package name="libtool" version="2.4">
|
|
|
27 <repository name="package_libtool_2_4" owner="iuc" prior_installation_required="True" />
|
|
|
28 </package>
|
|
|
29 <package name="Qt" version="4.8">
|
|
|
30 <repository name="package_qt_4_8" owner="iuc" prior_installation_required="True" />
|
|
|
31 </package>
|
|
|
32 <package name="zlib" version="1.2.8">
|
|
|
33 <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" />
|
|
|
34 </package>
|
|
|
35 <package name="bzlib" version="1.0.6">
|
|
|
36 <repository name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" />
|
|
|
37 </package>
|
|
|
38 <action type="set_environment_for_install">
|
|
|
39 <repository name="package_libtool_2_4" owner="iuc">
|
|
|
40 <package name="libtool" version="2.4" />
|
|
|
41 </repository>
|
|
|
42 <repository name="package_qt_4_8" owner="iuc">
|
|
|
43 <package name="Qt" version="4.8" />
|
|
|
44 </repository>
|
|
|
45 <repository name="package_zlib_1_2_8" owner="iuc">
|
|
|
46 <package name="zlib" version="1.2.8" />
|
|
|
47 </repository>
|
|
|
48 <repository name="package_bzlib_1_0" owner="iuc">
|
|
|
49 <package name="bzlib" version="1.0.6" />
|
|
|
50 </repository>
|
|
|
51 </action>
|
|
|
52 <action type="change_directory">../contrib</action>
|
|
|
53 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
|
|
|
54 <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
|
|
|
55 <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
|
|
|
56 <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
|
|
|
57 <action type="shell_command">cmake . -DBUILD_TYPE=BOOST -DNUMBER_OF_JOBS=4</action>
|
|
|
58 <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
|
|
|
59 <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
|
|
|
60 <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>
|
|
|
61 <action type="shell_command">cmake . -DBUILD_TYPE=EIGEN</action>
|
|
|
62 <action type="shell_command">cmake . -DBUILD_TYPE=WILDMAGIC</action>
|
|
|
63
|
|
|
64 <action type="change_directory">..</action>
|
|
|
65 <action type="shell_command">cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DHAS_XSERVER=OFF -DENABLE_TUTORIALS=OFF -DENABLE_STYLE_TESTING=OFF -DENABLE_UNITYBUILD=OFF -DWITH_GUI=OFF</action>
|
|
|
66 <action type="shell_command">make OpenMS TOPP UTILS</action>
|
|
|
67 <action type="shell_command">make install</action>
|
|
|
68 <action type="set_environment">
|
|
|
69 <environment_variable action="set_to" name="OPENMS_ROOT_PATH">$INSTALL_DIR</environment_variable>
|
|
|
70 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
|
|
|
71 <environment_variable action="set_to" name="OPENMS_DATA_PATH">$INSTALL_DIR/share/OpenMS</environment_variable>
|
|
|
72 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
|
|
|
73 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[QT_ROOT_DIR]/lib/</environment_variable>
|
|
|
74 </action>
|
|
|
75 </actions>
|
|
|
76 </actions_group>
|
|
|
77 </install>
|
|
|
78 <readme>
|
|
|
79 This package downloads and installs OpenMS.
|
|
|
80 http://open-ms.sourceforge.net/
|
|
|
81 </readme>
|
|
|
82 </package>
|
|
|
83 </tool_dependency>
|
