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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bctools" version="0.1.0">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions>
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7 <action target_filename="bctools-0.1.0-alpha.tar.gz" type="download_by_url">https://github.com/tzk/bctools/archive/v0.1.0-alpha.tar.gz</action>
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8 <action type="set_environment_for_install">
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9 <repository changeset_revision="f8d72690eeae" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu">
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10 <package name="biopython" version="1.65" />
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11 </repository>
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12 <!-- <repository name="package_python_2_7_pandas_0_16" owner="iuc">
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13 <package name="pandas" version="0.16" />
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14 </repository> -->
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15 <repository changeset_revision="045c4645abdf" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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16 <package name="pandas" version="0.14" />
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17 </repository>
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18 <!-- <repository name="package_python_2_7_pybedtools_0_6_9" owner="iuc">
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19 <package name="pybedtools" version="0.6.9" />
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20 </repository> -->
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21 <repository changeset_revision="372c85bed2ca" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
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22 <package name="pybedtools" version="0.6.6" />
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23 </repository>
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24
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25 </action>
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26 <action type="shell_command">
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27 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&
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28 python setup.py install --install-lib $INSTALL_DIR/lib/python
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29 </action>
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30 <action type="set_environment">
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31 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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32 <environment_variable action="set_to" name="BCTOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
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33 </action>
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34 </actions>
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35 </actions_group>
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36 </install>
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37 <readme>
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38 bctools - Set of tools for handling barcodes in NGS data.
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39 https://github.com/tzk/bctools
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40 </readme>
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41 </package>
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42 </tool_dependency>
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