Mercurial > repos > rnateam > mea

annotate test-data/test_dp.ps @ 9:ee79a49755da draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mea commit 6767a5ffb02052c844e9d862c79912f998f39d8e
author rnateam
date Mon, 20 Nov 2017 05:03:35 -0500
parents 9ab890b4d814
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
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1 %!PS-Adobe-3.0 EPSF-3.0
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2 %%Title: RNA Dot Plot
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3 %%Creator: PS_dot.c,v 1.38 2007/02/02 15:18:13 ivo Exp $, ViennaRNA-2.1.8
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4 %%CreationDate: Tue Jun 30 15:53:02 2015
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5 %%BoundingBox: 66 211 518 662
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6 %%DocumentFonts: Helvetica
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7 %%Pages: 1
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8 %%EndComments
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9
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10 %Options: -d2
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11 %
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12 %This file contains the square roots of the base pair probabilities in the form
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13 % i j sqrt(p(i,j)) ubox
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14
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15 %%BeginProlog
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16 /DPdict 100 dict def
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17 DPdict begin
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18 /logscale false def
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19 /lpmin 1e-05 log def
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20
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21 /box { %size x y box - draws box centered on x,y
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22 2 index 0.5 mul sub % x -= 0.5
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23 exch 2 index 0.5 mul sub exch % y -= 0.5
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24 3 -1 roll dup rectfill
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25 } bind def
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26
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27 /ubox {
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28 logscale {
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29 log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if
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30 } if
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31 3 1 roll
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32 exch len exch sub 1 add box
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33 } bind def
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34
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35 /lbox {
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36 3 1 roll
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37 len exch sub 1 add box
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38 } bind def
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39
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40 /drawseq {
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41 % print sequence along all 4 sides
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42 [ [0.7 -0.3 0 ]
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43 [0.7 0.7 len add 0]
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44 [-0.3 len sub -0.4 -90]
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45 [-0.3 len sub 0.7 len add -90]
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46 ] {
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47 gsave
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48 aload pop rotate translate
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49 0 1 len 1 sub {
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50 dup 0 moveto
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51 sequence exch 1 getinterval
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52 show
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53 } for
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54 grestore
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55 } forall
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56 } bind def
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57
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58 /drawgrid{
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59 0.01 setlinewidth
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60 len log 0.9 sub cvi 10 exch exp % grid spacing
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61 dup 1 gt {
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62 dup dup 20 div dup 2 array astore exch 40 div setdash
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63 } { [0.3 0.7] 0.1 setdash } ifelse
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64 0 exch len {
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65 dup dup
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66 0 moveto
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67 len lineto
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68 dup
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69 len exch sub 0 exch moveto
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70 len exch len exch sub lineto
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71 stroke
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72 } for
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73 [] 0 setdash
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74 0.04 setlinewidth
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75 currentdict /cutpoint known {
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76 cutpoint 1 sub
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77 dup dup -1 moveto len 1 add lineto
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78 len exch sub dup
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79 -1 exch moveto len 1 add exch lineto
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80 stroke
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81 } if
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82 0.5 neg dup translate
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83 } bind def
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84
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85 end
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86 %%EndProlog
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87 DPdict begin
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88 %delete next line to get rid of title
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89 270 665 moveto /Helvetica findfont 14 scalefont setfont (dot.ps) show
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90
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91 /sequence { (\
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92 ACGUAGCGGCGAUCGUAGCUAGCGCGCGAGUCGAUCGGCGCGGAUGCAUGCGGCGCGAGCGGUAGCGCGUAGGAGAUAUUAGCGGCGCGAUGCG\
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93 ) } def
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94 /len { sequence length } bind def
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95
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96 72 216 translate
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97 72 6 mul len 1 add div dup scale
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98 /Helvetica findfont 0.95 scalefont setfont
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99
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100 drawseq
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101 0.5 dup translate
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102 % draw diagonal
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103 0.04 setlinewidth
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104 0 len moveto len 0 lineto stroke
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105
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106 /min { 2 copy gt { exch } if pop } bind def
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107
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108 /utri{ % i j prob utri
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109 gsave
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110 1 min 2 div
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111 0.85 mul 0.15 add 0.95 0.33
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112 3 1 roll % prepare hsb color
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113 sethsbcolor
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114 % now produce the coordinates for lines
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115 exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub
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116 moveto lineto lineto closepath fill
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117 grestore
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118 } bind def
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119
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120 %data starts here
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121
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122 %start of quadruplex data
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123
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124 %draw the grid
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125 drawgrid
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126
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127 %start of base pair probability data
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849 59 68 0.9500000 lbox
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850 60 67 0.9500000 lbox
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851 61 66 0.9500000 lbox
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852 showpage
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853 end
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854 %%EOF