Mercurial > repos > rnateam > mafft

diff tool_dependencies.xml @ 6:e4a0bd9ea48c draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit eff9db2cd18c82a7de37851571b8989b48014c71"
author rnateam
date Wed, 15 Apr 2020 19:28:51 +0000
parents dd4a533a0e3c
children
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--- a/tool_dependencies.xml	Tue Sep 20 09:25:46 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="mafft" version="7.221">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/MAFFT/mafft-7.221-with-extensions-src.tgz</action>
-                <action type="change_directory">./core</action>
-                <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
-                <action type="shell_command">make clean; make; make install</action>
-                <action type="change_directory">../extensions</action>
-                <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
-                <action type="shell_command">make clean; make; make install</action>
-                <action type="set_environment">
-                    <environment_variable name="MAFFT_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>